base

[S1]: Start of the alignment region in the reference sequence.
[E1]: End of the alignment region in the reference sequence.
[S2]: Start of the alignment region in the query sequence.
[E2]: End of the alignment region in the query sequence.
[LEN 1]: Length of the alignment region in the reference sequence, measured in nucleotides.
[LEN 2]: Length of the alignment region in the query sequence, measured in nucleotides.
[% IDY]: Percent identity of the alignment, calculated as the (number of exact matches) / ([LEN 1] + insertions in the query).
[LEN R]: Length of the reference sequence.
[LEN Q]: Length of the query sequence.
[COV R]: Percent coverage of the alignment on the reference sequence, calculated as [LEN 1] / [LEN R].
[COV Q]: Percent coverage of the alignment on the query sequence, calculated as [LEN 2] / [LEN Q].
[TAG R]: ID/Name of the reference sequence (e.g., 2L).
[TAG Q]: ID/Name of the query sequence (e.g., NC_047628.2).

Genome Synteny