Scientific Name	Publication	NCBI Taxonomy	Release Date	?GenBank assembly	Genome Size	Assembly Level	Scaffold Num	Scaffold N50	Gene Number	Protein-coding gene counts	Download 	
Drosophila albomicans		7291	2022/8/16	GCF_009650485.2	167.5 Mb	"	Chromosome"	5	35.3 Mb	"15,605"	"14,002"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_009650485.2/	
Drosophila ananassae	https://academic.oup.com/g3journal/article/11/6/jkab083/6188627	7217	2021/7/16	GCF_017639315.1	213.8 Mb	Chromosome	8	26.4 Mb	"16,982"	"14,778"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_017639315.1/	
Drosophila biarmipes		125945	2022/9/16	GCF_025231255.1	193.6 Mb	Chromosome	6	26.9 Mb	"17,058"	"14,472"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_025231255.1/	
Drosophila bipectinata	https://academic.oup.com/g3journal/article/13/10/jkad191/7249150	42026	2023/6/12	GCF_030179905.1	191.9 Mb	Chromosome	7	26.1 Mb	17031	"14,680"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/179/905/GCF_030179905.1_DbipHiC1v2/	
Drosophila elegans	https://elifesciences.org/articles/66405	30023	2021/4/28	GCF_018152505.1	178.4 Mb	Contig	720	21.9 Mb	15345	"14,058"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/152/505/GCF_018152505.1_ASM1815250v1/	
Drosophila erecta	https://academic.oup.com/mbe/article/42/2/msaf038/8005449	7220	2018/10/23	GCF_003286155.1	146.5 Mb	Contig	94	22.1 Mb	"14,681"	"13,718 "	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_003286155.1/	
Drosophila grimshawi	https://elifesciences.org/articles/66405	7222	2021/4/28	GCF_018153295.1	191.4 Mb	Contig	"1,380"	23.3 Mb	"13,778"	"12,825"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_018153295.1/	
Drosophila gunungcola	https://academic.oup.com/gbe/article/15/3/evad048/7079968?login=false	103775	2022/9/15	GCF_025200985.1	189.8 Mb	Chromosome	6	3 Mb	"14,302"	"13,887"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_025200985.1/	
Drosophila hydei	https://www.biorxiv.org/content/10.1101/2022.11.30.518489v1.full.pdf+html	7224	2019/5/29	GCF_003285905.1	153.7 Mb	Contig	217	3.4 Mb	14400	"13,282"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/285/905/GCF_003285905.1_DhydRS2/	
Drosophila innubila	https://academic.oup.com/mbe/article/36/7/1405/5378707?login=false	198719	2019/3/19	GCF_004354385.1	168 Mb	Chromosome	7	29.6 Mb	15094	"13,595"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/354/385/GCF_004354385.1_UK_Dinn_1.0/	
Drosophila kikkawai	https://academic.oup.com/g3journal/article/13/10/jkad191/7249150	30033	2023/6/12	GCF_030179895.1	188.5 Mb	Chromosome	6	33.5 Mb	16962	"15,097"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/179/895/GCF_030179895.1_DkikHiC1v2/	
Drosophila madeirensis		30013	2024/3/7	GCA_040893045.1	135.5 Mb	Chromosome	6	24.2 Mb	"13,789"	"13,789"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_040893045.1/	
Drosophila mauritiana	/	7226	2019/4/16	GCF_004382145.1	152.3 Mb	Chromosome	6	24.2 Mb	16006	"14,112"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/382/145/GCF_004382145.1_ASM438214v1/	
Drosophila melanogaster	https://genome.cshlp.org/content/25/3/445.short	7227	2024/4/1	r6.59_FB2024_04	143.7 Mb	"	Chromosome"	7	"	25.3 Mb"	"	17,872"	"13,986"	https://s3ftp.flybase.org/genomes/Drosophila_melanogaster/dmel_r6.59_FB2024_04/index.html	
Drosophila miranda	https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2006348#pbio.2006348.s030	7229	2019/9/23	GCF_003369915.1	287.1 Mb	Chromosome	7	35.3 Mb	23864	"19,112"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/369/915/GCF_003369915.1_D.miranda_PacBio2.1/	
Drosophila mojavensis	https://elifesciences.org/articles/66405	7230	2021/4/28	GCF_018153725.1	163.2 Mb	Scaffold	"	301"	24.9 Mb	15130	"13,272"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/153/725/GCF_018153725.1_ASM1815372v1/	
Drosophila montana	https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002697	40370	2024/1/3	GCF_035044405.1	191.4 Mb	Contig	"3,285"	1.3 Mb	"15,263"	"13,411"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_035044405.1/	
Drosophila nasuta	https://academic.oup.com/mbe/article/39/5/msac080/6575839	42062	2022/5/31	GCF_023558535.2	171.8 Mb	Chromosome	5	33.9 Mb	"15,660"	"14,230"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_023558535.2/	
Drosophila novamexicana	https://academic.oup.com/gbe/article/16/1/evad238/7504578	47314	2018/10/23	GCF_003285875.2	177.2 Mb	Contig	269	3.2 Mb	14480	"13,260"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/285/875/GCF_003285875.2_DnovRS2.1/	
Drosophila obscura	https://elifesciences.org/articles/66405	7282	2021/4/28	GCF_018151105.1	179.8 Mb	Contig	215	3.9 Mb	16248	"14,694"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/151/105/GCF_018151105.1_ASM1815110v1/	
Drosophila persimilis		7234	2018/11/5	GCF_003286085.1	195.5 Mb	Contig	432	5.2 Mb	"15,854"	"14,397"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_003286085.1/	
Drosophila pseudoobscura	https://royalsocietypublishing.org/doi/full/10.1098/rstb.2021.0206	7237	2020/3/3	GCF_009870125.1	163.3 Mb	Chromosome	5	32.4 Mb	"16,880"	"14,343"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_009870125.1/	
Drosophila santomea	/	129105	2021/7/30	GCF_016746245.2	146.8 Mb	Chromosome	6	25.6 Mb	15485	"14,138"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/746/245/GCF_016746245.2_Prin_Dsan_1.1/	
Drosophila sechellia		7238	2019/4/16	GCF_004382195.2	153.1 Mb	Chromosome	6	25 Mb	"16,475"	"14,116"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_004382195.2/	
Drosophila simulans	https://genome.cshlp.org/content/33/4/587	?7240	2021/10/5	GCF_016746395.2	131.7 Mb	Chromosome	6	23.4 Mb	"15,845"	"14,256"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_016746395.2/	
Drosophila subobscura	/	7241	2019/4/28	GCF_008121235.1	126.2 Mb	Chromosome	6	24.2 Mb	14381	"13,440"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/121/235/GCF_008121235.1_UCBerk_Dsub_1.0/	
Drosophila subpulchrella	https://academic.oup.com/mbe/article/38/6/2532/6136175	1486046	2020/10/2	GCF_014743375.2	265.2 Mb	Chromosome	6	11.6 Mb	17912	"15,028"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/743/375/GCF_014743375.2_RU_Dsub_v1.1/	
Drosophila sulfurigaster albostrigata	https://academic.oup.com/mbe/article/39/5/msac080/6575839	89887	2022/5/31	GCF_023558435.1	168.3 Mb	Chromosome	5	37.6 Mb	"16,105"	"14,253"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_023558435.1/	
Drosophila suzukii	https://www.biorxiv.org/content/10.1101/2024.10.11.617812v2.abstract	28584	2024/3/20	GCF_037355615.1	178.7 Mb	Chromosome	6	26.7 Mb	"16,336"	"14,395"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_037355615.1/	
Drosophila takahashii	https://academic.oup.com/g3journal/article/13/10/jkad191/7249150	29030	2023/6/12	GCF_030179915.1	195.9 Mb	Chromosome	6	39.7 Mb	18388	"15,552"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/179/915/GCF_030179915.1_DtakHiC1v2/	
Drosophila teissieri	/	7243	2021/8/3	GCF_016746235.2	149.5 Mb	Chromosome	6	24.6 Mb	15460	"14,352"	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/746/235/GCF_016746235.2_Prin_Dtei_1.1/	
Drosophila tropicalis	https://elifesciences.org/articles/66405	46794	2023/1/18	GCF_018151085.1	211 Mb	Contig	"1,149"	5.1 Mb	"15,662"	"13,504"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_018151085.1/	
Drosophila virilis	https://academic.oup.com/gbe/article/16/1/evad238/7504578#450069436	7244	2018/10/23	GCF_003285735.1	189.4 Mb	Contig	222	8.7 Mb	"16,102"	"13,685"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_003285735.1/	
Drosophila willistoni	https://onlinelibrary.wiley.com/doi/10.1111/mec.16941	7260	2021/6/16	GCF_018902025.1	247 Mb	Chromosome	5	9.4 Mb	"16,774"	"14,774"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_018902025.1/	
Drosophila yakuba		7245	2021/7/30	GCF_016746365.2	147.9 Mb	Chromosome	6	25.2 Mb	"16,150"	"14,230"	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_016746365.2/